bridge.pipelines.gh2bt_for_meta package#

Public Interface#

This section documents user-facing interface of the bridge.pipelines.gh2bt_for_meta package (as defined in its __init__.py file).

Functions#

run(args)

Run the pipeline to extract bio.tools metadata from a GitHub repository.

Classes#

GitHubToBiotoolsForMetaPipelineArgs(**data)

Pipeline argument model for the GitHub to bio.tools for metadata pipeline.

Pipeline package for extracting (or updating) bio.tools metadata from a GitHub repository.

class bridge.pipelines.gh2bt_for_meta.GitHubToBiotoolsForMetaPipelineArgs(**data)[source]#

Bases: PipelineArgs

Pipeline argument model for the GitHub to bio.tools for metadata pipeline.

Parameters:

repo_model (GitHubRepoModel) – The source GitHub repository model.
repo_path (str) – The local path to the cloned GitHub repository.
existing_metadata (BiotoolsToolModel | None) – Existing bio.tools metadata model, if available. Default is None.

existing_metadata: ToolModel | None#

repo_model: GitHubRepoModel#

repo_path: str#

async bridge.pipelines.gh2bt_for_meta.run(args)[source]#

Run the pipeline to extract bio.tools metadata from a GitHub repository.

Parameters:: args (GitHubToBiotoolsForMetaPipelineArgs) – The pipeline arguments containing the GitHub repository model and existing bio.tools metadata.
Returns:: The extracted or updated bio.tools metadata model.
Return type:: BiotoolsToolModel

Subpackages#

map_funcs

Individual mapping functions for GitHub to bio.tools.

Submodules#

`main`	Implements the GitHub→bio.tools metadata pipeline: derives a BiotoolsToolModel from a GitHubRepoModel.
`map`	Mapping classes for GitHub to bio.tools.

Dependencies diagram#

Each architecture diagram below visualizes the internal dependency structure of the bridge.pipelines.gh2bt_for_meta package. It shows how modules and subpackages within the package depend on each other, based on direct Python imports.

Packages are shown as purple rectangles
Modules are shown as pink rectangles
Arrows (A → B) indicate that A directly imports B

Each subpackage’s diagram focuses only on its own internal structure, it does not include imports to or from higher-level packages (those appear in the parent package’s diagram).

bridge.pipelines.gh2bt_for_meta package

Contents