bridge.pipelines.gh2bt_for_meta.main module

bridge.pipelines.gh2bt_for_meta.main module#

Implements the GitHub→bio.tools metadata pipeline: derives a BiotoolsToolModel from a GitHubRepoModel.

class bridge.pipelines.gh2bt_for_meta.main.GitHubToBiotoolsForMetaPipelineArgs(**data)[source]#

Bases: PipelineArgs

Pipeline argument model for the GitHub to bio.tools for metadata pipeline.

Parameters:

  • repo_model (GitHubRepoModel) – The source GitHub repository model.

  • repo_path (str) – The local path to the cloned GitHub repository.

  • existing_metadata (BiotoolsToolModel | None) – Existing bio.tools metadata model, if available. Default is None.

existing_metadata: ToolModel | None#
repo_model: GitHubRepoModel#
repo_path: str#
async bridge.pipelines.gh2bt_for_meta.main.run(args)[source]#

Run the pipeline to extract bio.tools metadata from a GitHub repository.

Parameters:

args (GitHubToBiotoolsForMetaPipelineArgs) – The pipeline arguments containing the GitHub repository model and existing bio.tools metadata.

Returns:

The extracted or updated bio.tools metadata model.

Return type:

BiotoolsToolModel

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